PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29915.m000479
Common NameLOC8274942, RCOM_1058010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 330aa    MW: 37074.1 Da    PI: 5.74
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29915.m000479genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.41.4e-23128188259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    dDg++WrKYGqK++ +++fpr+Y+rCt++   gC+++k+v++ +edp    +tY g+H+++
  29915.m000479 128 DDGHAWRKYGQKVILNTKFPRNYFRCTHKydqGCQATKQVQKIEEDPPKYRTTYYGNHTCK 188
                    8***************************99999**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-25120188IPR003657WRKY domain
SuperFamilySSF1182909.02E-25122188IPR003657WRKY domain
PROSITE profilePS5081121.218122185IPR003657WRKY domain
SMARTSM007742.3E-36127189IPR003657WRKY domain
PfamPF031067.3E-24128188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDPSSPENLP STQRRAIGEL IRGRELARQL KIVLNSRDDM EEHVPVDDLV MKILNSFTNS  60
LSILNRFDSD IEFPPSTHVG SPCWDSGRKS EDSGESIRST STNKDRRGCY KRRKISNALI  120
RETSDLIDDG HAWRKYGQKV ILNTKFPRNY FRCTHKYDQG CQATKQVQKI EEDPPKYRTT  180
YYGNHTCKNL LKASHHLILE SPDDSSILLS FNTTNDSIIT SKQDSPFLTS FSSSSSIKQE  240
YKDELAHGNS DNDMINIIHN NSIMNNQSSS TDYLLAPDDL SALDHADVIS GVNSSSCTTS  300
THSFDMDMIV SSVGHACFAA DDDDVLPYAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-131251851572Probable WRKY transcription factor 4
2lex_A6e-131251851572Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528697.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLB9SRT40.0B9SRT4_RICCO; WRKY transcription factor, putative
STRINGPOPTR_0006s10950.11e-110(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-44WRKY DNA-binding protein 70